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"cumsum_cpp", "title": "cumsum_cpp This function calculates the cumulative sum (partial sum) of a vector.", "topics": [ "cumsum_cpp" ] }, { "page": "downSampleRead", "title": "downSampleRead This function uses down-sampling to obtain the reads in each spot.", "topics": [ "downSampleRead" ] }, { "page": "est_bound", "title": "est_bound", "topics": [ "est_bound" ] }, { "page": "estimate_gamma", "title": "estimate_gamma This function estimates gamma distribution shape and rate parameters.", "topics": [ "estimate_gamma" ] }, { "page": "estimate_lognormal", "title": "estimate_lognormal This function estimates estimate_lognormal distribution loc and scale parameters.", "topics": [ "estimate_lognormal" ] }, { "page": "estimate_nb", "title": "estimate_nb This function estimates negative binomial distribution mean and dispersion parameters.", "topics": [ "estimate_nb" ] }, { "page": "estimate_zinb", "title": "estimate_zinb This function estimates the mean, dispersion and zero inflation parameters in zero-inflated negative binomial distribution.", "topics": [ "estimate_zinb" ] }, { "page": "estimate_zip", "title": "estimate_zip", "topics": [ "estimate_zip" ] }, { "page": "fcsim", "title": "fcsim", "topics": [ "fcsim" ] }, { "page": "GeneScape_est", "title": "GeneScape_est", "topics": [ "GeneScape_est" ] }, { "page": "GeneScape_par", "title": "GeneScape_par", "topics": [ "GeneScape_par" ] }, { "page": "GeneScape_sim", "title": "GeneScape_sim", "topics": [ "GeneScape_sim" ] }, { "page": "GeneScapeS_est", "title": "GeneScapeS_est This function estimates distribution parameters from an example data.", "topics": [ "GeneScapeS_est" ] }, { "page": "GeneScapeS_sim", "title": "GeneScapeS_sim This function generates simulated data based on distribution parameters estimated from an example data.", "topics": [ "GeneScapeS_sim" ] }, { "page": "inverse_logit", "title": "inverse_logit This function is the inverse logit function.", "topics": [ "inverse_logit" ] }, { "page": "knn_tissue_update", "title": "knn_tissue_update", "topics": [ "knn_tissue_update" ] }, { "page": "knnassign", "title": "knnassign This function uses KNN sampling to simulate gradually changed tissue types.", "topics": [ "knnassign" ] }, { "page": "rotate_pg", "title": "rotate_pg", "topics": [ "rotate_pg" ] }, { "page": "rotate_sample", "title": "rotate_sample", "topics": [ "rotate_sample" ] }, { "page": "sample_int", "title": "sample_int This function samples integers from 1 to an upper limit integer value with equal probability without replacement.", "topics": [ "sample_int" ] }, { "page": "sample_region_simulation", "title": "sample_region_simulation", "topics": [ "sample_region_simulation" ] }, { "page": "scale_sample", "title": "scale_sample", "topics": [ "scale_sample" ] }, { "page": "shift_sample", "title": "shift_sample", "topics": [ "shift_sample" ] }, { "page": "sp_dist_euclidean_cpp", "title": "sp_dist_euclidean_cpp This function calculates Euclidean distance between cell 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